Optional group:
CURRICULUM MODELLISTICO APPLICATIVO SCEGLIERE TRE INSEGNAMENTI (21 CFU) NEGLI SSD MAT/01,02,03,04,05 TRA LE ATTIVITÀ CARATTERIZZANTI (B) - (show)
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21
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20402083 -
AL4 - ELEMENTS OF ADVANCED ALGEBRA
(objectives)
OBTAIN GOOD KNOWLEDGE OF THE CONCEPTS AND METHODS OF THE THEORY OF EQUATIONS IN ONE VARIABLE. UNDERSTAND AND BE ABLE TO APPLY THE “FUNDAMENTAL THEOREM OF CORRESPONDENCE OF GALOIS” IN ORDER STUDY THE “COMPLEXITY” OF A POLYNOMIAL.
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Derived from
20402083 AL310 - ISTITUZIONI DI ALGEBRA SUPERIORE in MATEMATICA (DM 270) L-35 N0 PAPPALARDI FRANCESCO, TALAMANCA VALERIO
( syllabus)
Introduction: Cardano equations for the solubility of third-degree equations, rings and fields, the characteristics of a field, known facts about rings of polynomials, field extensions, construction of some field extensions, the sub-ring generated by a subset, the subfield generated by a subset, algebraic and transcendent elements, algebraically closed fields.
Splitting fields: Simple extensions and maps between simple extensions, splitting fields, existence of the splitting field, uniqueness up to isomorphisms of the splitting field, multiple roots, formal derivatives, separable polynomials and perfect fields, minimal polynomials and their characterizations.
The fundamental Theorem of Galois Theory: Group of the automorphisms of a field, normal, separable and Galois extensions, characterizations of separable extensions, Fundamental Theorem of Galois Correspondence, examples, Galois group of a polynomial, Radical extensions, solvable groups and Galois's Theorem on solving equations , Theorem of the existence of primitive elements.
The computation of Galois group: Galois groups as subgroups of $ S_n $, transitive subgroups of $ S_n $, characterization of irreducibility in terms of transitivity, polynomials with Galois groups in $ A_n $, Theory of discriminants, Galois groups of polynomials with degree up to $4$, examples of polynomials with Galois group $S_p$.
Cyclotomic fields: Definitions, Galois group, maximal real subfields, quadratic subfields, Galois groups, cyclotomic polynomials and their properties, Theorem of the inverse Galois theory for abelian groups.
Finite fields: Existence and uniqueness of finite fields, Galois group of a finite field, subfields of a finite field, enumeration of irreducible polynomials on finite fields. Construction of the algebraic closure of a finite field with $ p $ elements.
Constructions with ruler and compass: Definition of constructible points of the plane, constructible real numbers, characterization of constructible points in terms of fields, constructible subfields and construction of constructible numbers, cube duplication, trisection of angles, quadrature of the circle and Gauss's theorem for the construction of regular polygons with ruler and compass.
( reference books)
J. S. Milne.Fields and Galois Theory. Course Notes v4.22 (March 30, 2011). S. Gabelli. Teoria delle Equazioni e Teoria di Galois. Springer UNITEXT (La Matematica per il 3+2) 2008, XVII, 410 pagg., ISBN: 978-88-470-0618-8 E. Artin.Galois Theory. NOTRE DAME MATHEMATICAL LECTURES Number 2. 1942. C. Procesi.Elementi di Teoria di Galois. Decibel, Zanichelli, (Seconda ristampa, 1991).
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7
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MAT/02
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60
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12
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Core compulsory activities
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ITA |
20402085 -
AM310 - ELEMENTS OF ADVANCED ANALYSIS
(objectives)
The student is going to learn the basics of the Lebesgue integration theory: measure spaces, measurability, Lebesgue integral, L^p spaces, differentiation.
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Derived from
20402085 AM310 - ISTITUZIONI DI ANALISI SUPERIORE in MATEMATICA (DM 270) L-35 N0 ESPOSITO PIERPAOLO, BATTAGLIA LUCA
( syllabus)
1. Abstract integration theory Riemann integration theory. The concept of measurability. Step functions. Elementary properties of measures. Arithmetic in [0,∞]. Integration of positive functions. Integration of complex functions. Importance of sets with null measure. 2. Positive Borel measures Vector spaces. Topological preliminaries. Riesz representation theorem. Regularity properties of Borel measures. Lebesgue measure. Continuity properties of measurable functions. 3. L^p spaces Inequalities and convex functions. L^p spaces. Approximation through continuous functions. 4. Basic theory of Hilbert spaces Inner products and linear functionals. Dual space of L^2 4. Integration on product spaces Measurability on cartesian products. Product measure. Fubini theorem. 4. Complex measures Total variation. Absolute continuity. Radon-Nykodym theorem. Bounded linear functionals on L^p. The Riesz representation theorem.
( reference books)
"Analisi reale e complessa”, W. Rudin. Bollati Boringhieri.
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7
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MAT/05
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60
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12
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Core compulsory activities
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ITA |
20402087 -
GE310 - ELEMENTS OF ADVANCED GEOMETRY
(objectives)
A REFINED STUDY OF TOPOLOGY VIA ALGEBRAIC AND ANALYTIC TOOLS.
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7
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MAT/03
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60
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12
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Core compulsory activities
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ITA |
20402090 -
MC410 - COMPLEMENTARY MATHEMATICS 1
(objectives)
To acquire deep understanding of the principal geometry arguments treated in high-school mathematics
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7
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MAT/04
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60
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Core compulsory activities
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ITA |
20402094 -
AL410 - COMMUTATIVE ALGEBRA
(objectives)
THE PURPOSE OF THIS COURSE IS TO DEEPEN THE KNOWLEDGE OF SOME TOOLS AND FUNDAMENTAL PROPERTIES OF COMMUTATIVE RINGS AND THEIR MODULES, WITH PARTICULAR EMPHASIS TO THE CASE OF RINGS ARISING IN ALGEBRAIC NUMBER THEORY AND ALGEBRAIC GEOMETRY.
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7
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MAT/02
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60
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Core compulsory activities
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ITA |
20402097 -
AM410 - ELLITTIC PARTIAL DIFFERENTIAL EQUATIONS
(objectives)
To develop a good knowledge of the general methods and the classical techniques useful in the study of partial differential equations
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ESPOSITO PIERPAOLO
( syllabus)
1. Preliminaries Definition of hyper-surface. Integration on hyper-surfaces. The divergence theorem.
2. The Laplace equation Mean value inequalities. Minimum and maximum principle. The Harnack inequality. The Green representation. The Poisson integral. Convergence theorems. Interior estimates on the derivatives. The Dirichlet problem: the method of sub-harmonic functions.
3. The classical maximum principle The weak maximum principle. The strong maximum principle. The Hopf lemma.
4. The Poisson equation and the Newtonian potential Hölder-continuity. The Dirichlet problem for the Poisson equation. Hölder estimates for second derivatives. Boundary estimates. Hölder estimates for first derivatives.
5. Banach and Hilbert spaces The contraction principle. The continuity method.
6. Classical solutions: the Schauder approach Schauder interior estimates. Boundary and global estimates. The Dirichlet problem. Boundary and interior regularity.
( reference books)
“Elliptic partial differential equations of second order. Reprint of the 1998 edition”, D. Gilbarg e N.S. Trudinger. Classics in Mathematics. Springer-Verlag, Berlin, 2001.
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7
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MAT/05
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60
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Core compulsory activities
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ITA |
20402104 -
GE410 - ALGEBRAIC GEOMETRY 1
(objectives)
Introduction to the study of topological and geometrical structures defined using algebraic methods. Refinement of the algebraic knowledge using applications to the study of algebraic varieties in affine and projective spaces.
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Derived from
20402104 GE410 - GEOMETRIA ALGEBRICA 1 in MATEMATICA (DM 270) LM-40 N0 LOPEZ ANGELO
( syllabus)
Affine Spaces Zariski topology. Affine closed subsets and radical ideals. Theorem of the zeros of Hilbert. Correspondence between closed subsets and radical ideals. Noetherian topological spaces. Irreducible closed subsets, irreducible components. Regular functions of affine closed subsets. Regular maps, isomorphisms. Principal open subsets. Examples. Projections are open. Finite morphisms.
Varieties Projective spaces and their Zariski topology. Quasi-projective varieties. Rational and regular maps. Projective hypersurfaces. Birational equivalence. Principal open subsets and affine closed subsets. Affine varieties. Dimension of quasi-projective varieties. Finite and generically finite morphisms. Characterizations of birational equivalence. Characterization of generically finite morphisms. Costructible sets, Chevalley's theorem. Every variety is birational to a hypersurface.
Local geometry Local ring of a variety in a point. Zariski cotangent space. Zariski tangent space. Singular and non singular points.
( reference books)
L. Caporaso Introduction to algebraic geometry Notes of the course
I. Shafarevich Basic Algebraic geometry Springer-Verlag, Berlin, 1994
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7
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MAT/03
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60
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Core compulsory activities
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ITA |
20410038 -
GRAPH THEORY
(objectives)
Provide tools and methods of graph theory
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Derived from
20410038 GE460 - TEORIA DEI GRAFI in MATEMATICA (DM 270) LM-40 MASCARENHAS MELO ANA MARGARIDA
( syllabus)
Graphs: basic definitions. Simple and non simple graphs, planarity, connectivity, degree, regularity, incidence and adjacency matrices. Examples of families of graphs. The '' handshaking lemma ''. Graphs obtained from others: complement, subgraph, cancellation and contraction. Isomorphisms and automorphisms of graphs. Connectivity: paths, cycles. A graph is bipartite if and only if each cycle has equal length. Connetivity and connected component. Connectivity for sides and vertices. Eulerian and semi-Eulerian graphs. Euler's theorem: a connected graph is Eulerian if and only if every vertex has an even degree. Hamiltonian graphs. Sufficient conditions to guarantee that a graph is Hamiltonian: the theorems of Ore and Dirac. the Ore theorem. Trees and forests. The cyclomatic number and the "cutset" rank of a graph. Fundamental system of cycles and cuts associated with a generating forest. Enumeration of generating forests. The Cayley theorem. Generating trees: the "greedy" algorithm for the "connector problem". Planar graphs. K3.3 and K5 are not planar. Statement of the theorem of Kuratovski and variations. Euler's formula for planar graphs. The dual of a planar graph. Correspondence between cycles and cuts for planar graphs and their dual. Dual abstract. A graph that admits a dual abstract is planar. Colorings: initial considerations and some properties. Colorings: the 5 colors theorem. Graphs on surfaces: classification of topological surfaces. Coloring of faces and duality between this problem and the coloring of vertices. Reduction of the proof of the 4-color theorem to the coloring of cubic graph faces. '' The marriage problem ": Hall's theorem. Hall's theorem in the language of transversals. Criteria of existence of transversal and partial transversivities. Application to the construction of Latin squares. Direct graphs: basic notions and orientability. The Max-Flow Min-Cut theorem and Menger's theorem. Complexity of algorithms and applications to the theory of graphs. Introduction to the theory of matroids: definitions using bases and independent elements. Graphical and cographic matroids, vector matroids and the problem of representability. Definition of matroid using the cycles and the rank function. Minors of a matroid. Transverse matroids and the Rado Theorem for matroids. Union of matroids and applications: existence of disjoint bases in a matroid. Duality for matroids and applications to graphic and cographic matroids. Planar matroids and the generalization of Kuratovski's theorem for matroids. Elements of algebraic graph theory: the incidence matrix and the Laplacian matrix of an oriented graph. The vertex space and the space of edges of a graph. Subspaces of the cycles and subspace of the cuts of a defined oriented graph of the incidence matrix. Basis for the space of the cycles and for the space of the cuts of a graph. The Riemann-Roch theorem for graphs. Proof of the "generalized Matrix Tree theorem". The contraction / restriction algorithm for matroids. Examples. The number of acyclical orientations of a graph. Graph polynomials: the chromatic polynomial, the "reliabiliaty" polynomial. Examples. The polynomial rank of a matroid. Properties and first applications. Proof of the structure theorem for functions on matroids that satisfy contraction/restriction properties. Their incarnation through the polynomial rank. Whitey's moves and two isomorphisms for graphs. Isomorphism between graphical matroids implies isomorphism between graphs in case the graphs are 3 connected. Whitney's Theorem for graphic matroids: sketch of the demonstration. Characterization for minors excluded from binary and regular matroids. The theorem of Seymour.
( reference books)
R. Diestel: Graph theory, Spriger GTM 173. R. Wilson: Introduction to Graph theory, Prentice Hall. B. Bollobas: Modern Graph theory, Springer GTM 184. J. A. Bondy, U.S.R. Murty: Graph theory, Springer GTM 244. N. Biggs: Algebraic graph theory, Cambridge University Press. C. D. Godsil, G. Royle: Algebraic Graph theory, Springer GTM 207. J. G. Oxley: Matroid theory. Oxford graduate texts in mathematics, 3.
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7
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MAT/03
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60
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Core compulsory activities
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ITA |
20410137 -
IN410 - MODELLI DI CALCOLO
(objectives)
The course of Computer Institutions is devoted to the deepening of the mathematical aspects of the computation concept, to the study of the relationships between different computational models and computational complexity.
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Derived from
20410137 IN410 - MODELLI DI CALCOLO in SCIENZE COMPUTAZIONALI (DM 270) LM-40 PEDICINI MARCO, Pistone Paolo
( syllabus)
1) Computability, complexity and representability:
- Introduction to decision problems, algorithmic and non-algorithmic procedures, deterministic computations, discrete procedures, the notion of an alphabet, the notion of a formal language. Decidability and semi-decidability of a set. Deterministic, finitary and discrete computations. Formal algorithms: formal definition of algorithm, configurations of input, output, transition function. Example of formalization of an algorithm. Decidability for finished automata. Representation of the automata by matrices. Free Monoid of words. Formal semi-rings. Non-deterministic finite automata. Regular Languages. Equivalence between deterministic and non-deterministic automata.
- Turing machines: definition, decidability for Turing machine, stopping time, stopping space. Cost of computation. Complexity: worst case and average case. Independence of decision time from a finite number of input configurations. Complexity functions, complexity classes DTIME and DSPACE (deterministic time and space). Inclusion DTIME (T (n)) ⊂ DSPACE (T (n)) ⊂ DTIME (2 ^ {cT (n)}). Pumping Lemma. Simulation of algorithms, simulation of the half tape Turing machine, simulation of a multi-tape machine. Special Turing machines. Linear Speedup theorem for Turing machines with an extended alphabet. Evaluation of acceleration coefficient in relation to alphabets. Decisions of natural number sets. Independence from representation. Considerations concerning complexity.
- Turing computability: definition of Turing computable function, characteristic functions of Turing decidable sets, the class of Turing computable functions is closed by composition, concatenation, primitive recursion and minimization. Examples of Turing computable functions. Recursive Functions: equivalence between Turing computability and recursive functions. Ackermann function ([1] chapter 1,2,3,4,5 and [4] chapter 1).
- Time-constructible functions. The notion of T-clock. Examples of some time constructible function. Closure by composition.
- Non-deterministic Turing machines: characterization through the decidability of projection sets. Definition of the class of polynomial non-deterministic functions. NP-complete problems.
2) Lambda calculus and functional programming:
- Declarative programming: historical outline on the lambda calculus, basic definitions, the terms of the lambda calculus, the simple substitution. Relations on the lambda terms. Congruences, transition to the context. α-equivalence. alpha-equivalence passes to the context. Transitive closure of a relationship, owned by Church-Rosser. Listing of lambda-terms with respect to alpha-equivalence.
- Definition of beta-reduction and beta-equivalence. Church-Rosser's theorem for beta-reduction. Normal forms for beta-reduction. Beta-reduction strategies. Normalizing strategy: left reduction (left most-outer most). Head reduction. Soluble Terms. Head Normal Forms. Solvability characterization theorem.
- Representation of the recursive functions: lambda definability theorem. The existence of the fixed point for any lambda term. Church Fixed Point and Curry fixed point. - Representation of other data types in the lambda-calculus: pairs, lists, trees, the solution of recursive equations on lambda-terms ([2] chapters 1, 2, 5).
( reference books)
- P. Dehornoy, Calculabilite et Decidabilite, (1993) Springer-Verlag (in francese); - J.-L. Krivine, Lambda Calculus: Types and Models, (1993) Ellis Horwood editore. - M. Sipser, An introduction to the theory of computation (2005), Course Technology.
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7
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MAT/01
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60
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12
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Core compulsory activities
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ITA |
20410189 -
LM410 -THEOREMS IN LOGIC 1
(objectives)
To acquire a good knowledge of first order classical logic and its fundamental theorems
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7
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MAT/01
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60
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Core compulsory activities
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ITA |
20410190 -
LM420 - THEOREMS IN LOGIC 2
(objectives)
To support the students into an in-depth analysis of the main results of first order classical logic and to study some of their remarkable consequences
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7
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MAT/01
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60
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Core compulsory activities
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ITA |
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Optional group:
SCEGLIERE QUATTRO INSEGNAMENTI (28 CFU) TRA LE ATTIVITÀ AFFINI INTEGRATIVE (C) - (show)
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28
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20402115 -
ST410 - STATISTICS 1
(objectives)
Acquire a good understanding of the basic statistical mathematical methodologies for inference problems and statistical modeling. Develop a knowledge of some specific statistical packages for the practical application of acquired theoretical tools
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7
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SECS-S/01
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60
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12
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Related or supplementary learning activities
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ITA |
20402122 -
FS420 - QUANTUM MECHANICS
(objectives)
Provide a basic knowledge of quantum mechanics, discussing the main experimental evidence and the resulting theoretical interpretations that led to the crisis of classical physics, and illustrating its basic principles: concept of probability, dual-wave-particle, principle of indetermination. The quantum dynamics, the Schrodinger equation and its resolution for some relevant physical systems are then described.
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Derived from
20410015 MECCANICA QUANTISTICA in FISICA (DM 270) L-30 LUBICZ VITTORIO, TARANTINO CECILIA
( syllabus)
QUANTUM MECHANICS: THE CRISIS OF CLASSICAL PHYSICS. WAVES AND PARTICLES. STATE VECTORS AND OPERATORS. MEASUREMENTS AND OBSERVABLES. THE POSITION OPERATOR. TRANSLATIONS AND MOMENTUM. TIME EVOLUTION AND THE SCHRODINGER EQUATION. PARITY. ONE-DIMENSIONAL PROBLEMS. HARMONIC OSCILLATOR. SYMMETRIES AND CONSERVATION LAWS. TIME INDEPENDENT PERTURBATION THEORY. TIME DEPENDENT PERTURBATION THEORY.
( reference books)
J.J. SAKURAI, J. NAPOLITANO. MECCANICA QUANTISTICA MODERNA. SECONDA EDIZIONE, ZANICHELLI, BOLOGNA, 2014
An english version of the book is also available: J.J. SAKURAI, J. NAPOLITANO. MODERN QUANTUM MECHANICS. SECOND EDITION, PEARSON EDUCATION LIMITED 2014
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7
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FIS/02
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60
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Related or supplementary learning activities
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ITA |
20410068 -
MATHEMATICS OF FINANCIAL MARKETS
(objectives)
Acquire knowledge of the basics of financial mathematics. Deepen the Valuation of financial assets and securities Bonds, the forward rate structure interest. Studying CAPM and APT Templates for Portfolio choices, utility functions, and dynamics Of the price of equities at discretionary time and Continuous, valuation of derivatives
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PIERINI ANDREA
( syllabus)
Time structure of the exchange of amounts, capital and interest: exchange of amounts, time, price, price of time, convention for measuring time, deferred contracts and rights, transactions with a fixed schedule, regular investment / indebtedness transactions, laws financial, the law of simple interests, the law of compound interests, fundamental definitions based on the value function, factors rates and intensity, instantaneous intensity. Contracts, exchange, prices: prices on the primary and secondary market, some types are bond contracts, zero coupon securities (ZCB), fixed coupon bonds (CB), accruals, and tel. Risks: time, uncertainty, risk, credit risk for mortgages and bonds, Evaluation in conditions of certainty, the exponential law: the exponential function as a law of financial equivalence, rates and equivalent intensity in exponential and linear law, evaluation of a financial transaction based on exponential law, equity, functional properties of exponential law, breakdown of financial transactions; annuities and amortization schedules: definitions, present value of annuities in constant installments, deferred immediate annuity of duration m, deferred perpetual annuity, immediate anticipated annuity of duration m, anticipated perpetual annuity, deferred annuities of n years, deferred (deferred) annuity, perpetual deferred payment in advance. Earnings in appearance, deferred income in constant installments, early repayments at constant installments, deferred annuities with constant capital, the repayment schedule, single repayment amortization; internal rate of return: the case of periodic payments, the Descartes theorem, the case of a ZCB, the case of an investment transaction, the case of a financial transaction consisting of three amounts, the case of a CB quoted on par, the Newton method, the APR (Gross annual percentage rate); theory of financial equivalence laws: the value function in a spot contract, the value function in a forward contract, the ownership of uniformity over time, discount and capitalization factors, hypothesis of consistency between spot contracts and forward contracts , the property of divisibility, interest rates and intensity, equivalent rates, the instantaneous intensity of interest, integral form of the discount factor, uniform laws, divisible laws, Cantelli's theorem, yield maturity intensity (yield to maturity) , linear and hyperbolic capitalization, linearity of present value. Financial transactions in the market: value function and market prices: the characteristic assumptions of the market, the perfect market, the principle of non-arbitrage, the absence of arbitrage, the single price law, zero coupon coupons, decryption theorem with respect to maturity, coupon bonds nothing not unitary, amount independence theorem, ZCB portfolios with different maturity, price linearity theorem, forward contracts, implicit price theorems, implicit rates, considerations on tax effects, case of Treasury Obligation Bonds (BOT); interest rate maturity structure: spot maturity structures, implicit maturity structures, dominance relationship between implied interest rate structure and spot rate structure, discrete time tables, discrete time schedules with a continuous pattern, parity, risky structures and credit spreads; time index and variability indices: payment flow timescales, maturity and maturity life, duration, the case of constant-rate annuities, second-order moments, duration and dispersion of portfolios, indices of variability of a payment flow , analysis of price sensitivity, semi-elasticity, elasticity, convexity, "thumb rule"; measurement of the interest rate maturity structure: methods based on the internal rate of return, methods based on linear algebra, methods based on the parity rate, swap rate as parity rate, methods based on the estimation of a model, Masera model , Nelson -Siegel-Svensson model; arbitrage valuation of variable rate plans: random financial transactions, variable rate coupons, effects of perfect indexing of interest shares, reinvestment security, valuation of the stochastic ZCB, logic of the replicating portfolio, valuation of the individual indexed coupon, valuation of the flow of indexed coupons, valuation of the coupon at a variable rate at issue and in place, equivalence with a roll-over strategy; interest rate sensitive contracts (outlines): the valuation of contracts dependent on nominal interest rates, recalls on the theory of the structure by maturity in certainty conditions, models of the structure by maturity in certainty conditions, examples of IRS contracts, stochastic models for contracts IRS, a class of uni models that varied over time, the basic assumptions, the dynamics of IRS contracts, the hedging argument, risk measures, the Vasicek model.
( reference books)
Castellani, G., De Felice, M., Moriconi, F. Manuale di finanza. Tassi d’interesse. Mutui e obbligazioni. Il Mulino, 2005 Allevi, E., Bosi, G., Riccardi, R., Zuanon, M., Matematica finanziaria e attuariale, Pearson, 2017 Luenberger, D., G., Introduzione alla matematica finanziaria, Apogeo, 2015 Cesari, R., Introduzione alla Finanza Matematica. Mercati azionari, rischi e portafogli, McGraw-Hill, 2012 Castellani, G., De Felice, M., Moriconi, F. Manuale di finanza. Tassi d’interesse. Mutui e obbligazioni. Il Mulino, 2005 Castellani, G., De Felice, M., Moriconi, F. Modelli stocastici e contratti derivati. Il Mulino, 2005 Naccarato, A., Pierini, A., “BEKK element-by-element estimation of a volatility matrix, A portfolio simulation”, in Mathematical and Statistical Methods for Actuarial Sciences and Finance, (editors Perna, C., Sibillo, M.), Springer, 2014 Lecture notes (delivered to class)
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7
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SECS-S/06
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60
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Related or supplementary learning activities
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ITA |
20410038 -
GRAPH THEORY
(objectives)
Provide tools and methods of graph theory
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Derived from
20410038 GE460 - TEORIA DEI GRAFI in MATEMATICA (DM 270) LM-40 MASCARENHAS MELO ANA MARGARIDA
( syllabus)
Graphs: basic definitions. Simple and non simple graphs, planarity, connectivity, degree, regularity, incidence and adjacency matrices. Examples of families of graphs. The '' handshaking lemma ''. Graphs obtained from others: complement, subgraph, cancellation and contraction. Isomorphisms and automorphisms of graphs. Connectivity: paths, cycles. A graph is bipartite if and only if each cycle has equal length. Connetivity and connected component. Connectivity for sides and vertices. Eulerian and semi-Eulerian graphs. Euler's theorem: a connected graph is Eulerian if and only if every vertex has an even degree. Hamiltonian graphs. Sufficient conditions to guarantee that a graph is Hamiltonian: the theorems of Ore and Dirac. the Ore theorem. Trees and forests. The cyclomatic number and the "cutset" rank of a graph. Fundamental system of cycles and cuts associated with a generating forest. Enumeration of generating forests. The Cayley theorem. Generating trees: the "greedy" algorithm for the "connector problem". Planar graphs. K3.3 and K5 are not planar. Statement of the theorem of Kuratovski and variations. Euler's formula for planar graphs. The dual of a planar graph. Correspondence between cycles and cuts for planar graphs and their dual. Dual abstract. A graph that admits a dual abstract is planar. Colorings: initial considerations and some properties. Colorings: the 5 colors theorem. Graphs on surfaces: classification of topological surfaces. Coloring of faces and duality between this problem and the coloring of vertices. Reduction of the proof of the 4-color theorem to the coloring of cubic graph faces. '' The marriage problem ": Hall's theorem. Hall's theorem in the language of transversals. Criteria of existence of transversal and partial transversivities. Application to the construction of Latin squares. Direct graphs: basic notions and orientability. The Max-Flow Min-Cut theorem and Menger's theorem. Complexity of algorithms and applications to the theory of graphs. Introduction to the theory of matroids: definitions using bases and independent elements. Graphical and cographic matroids, vector matroids and the problem of representability. Definition of matroid using the cycles and the rank function. Minors of a matroid. Transverse matroids and the Rado Theorem for matroids. Union of matroids and applications: existence of disjoint bases in a matroid. Duality for matroids and applications to graphic and cographic matroids. Planar matroids and the generalization of Kuratovski's theorem for matroids. Elements of algebraic graph theory: the incidence matrix and the Laplacian matrix of an oriented graph. The vertex space and the space of edges of a graph. Subspaces of the cycles and subspace of the cuts of a defined oriented graph of the incidence matrix. Basis for the space of the cycles and for the space of the cuts of a graph. The Riemann-Roch theorem for graphs. Proof of the "generalized Matrix Tree theorem". The contraction / restriction algorithm for matroids. Examples. The number of acyclical orientations of a graph. Graph polynomials: the chromatic polynomial, the "reliabiliaty" polynomial. Examples. The polynomial rank of a matroid. Properties and first applications. Proof of the structure theorem for functions on matroids that satisfy contraction/restriction properties. Their incarnation through the polynomial rank. Whitey's moves and two isomorphisms for graphs. Isomorphism between graphical matroids implies isomorphism between graphs in case the graphs are 3 connected. Whitney's Theorem for graphic matroids: sketch of the demonstration. Characterization for minors excluded from binary and regular matroids. The theorem of Seymour.
( reference books)
R. Diestel: Graph theory, Spriger GTM 173. R. Wilson: Introduction to Graph theory, Prentice Hall. B. Bollobas: Modern Graph theory, Springer GTM 184. J. A. Bondy, U.S.R. Murty: Graph theory, Springer GTM 244. N. Biggs: Algebraic graph theory, Cambridge University Press. C. D. Godsil, G. Royle: Algebraic Graph theory, Springer GTM 207. J. G. Oxley: Matroid theory. Oxford graduate texts in mathematics, 3.
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7
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MAT/03
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60
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Related or supplementary learning activities
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ITA |
20410137 -
IN410 - MODELLI DI CALCOLO
(objectives)
The course of Computer Institutions is devoted to the deepening of the mathematical aspects of the computation concept, to the study of the relationships between different computational models and computational complexity.
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Derived from
20410137 IN410 - MODELLI DI CALCOLO in SCIENZE COMPUTAZIONALI (DM 270) LM-40 PEDICINI MARCO, Pistone Paolo
( syllabus)
1) Computability, complexity and representability:
- Introduction to decision problems, algorithmic and non-algorithmic procedures, deterministic computations, discrete procedures, the notion of an alphabet, the notion of a formal language. Decidability and semi-decidability of a set. Deterministic, finitary and discrete computations. Formal algorithms: formal definition of algorithm, configurations of input, output, transition function. Example of formalization of an algorithm. Decidability for finished automata. Representation of the automata by matrices. Free Monoid of words. Formal semi-rings. Non-deterministic finite automata. Regular Languages. Equivalence between deterministic and non-deterministic automata.
- Turing machines: definition, decidability for Turing machine, stopping time, stopping space. Cost of computation. Complexity: worst case and average case. Independence of decision time from a finite number of input configurations. Complexity functions, complexity classes DTIME and DSPACE (deterministic time and space). Inclusion DTIME (T (n)) ⊂ DSPACE (T (n)) ⊂ DTIME (2 ^ {cT (n)}). Pumping Lemma. Simulation of algorithms, simulation of the half tape Turing machine, simulation of a multi-tape machine. Special Turing machines. Linear Speedup theorem for Turing machines with an extended alphabet. Evaluation of acceleration coefficient in relation to alphabets. Decisions of natural number sets. Independence from representation. Considerations concerning complexity.
- Turing computability: definition of Turing computable function, characteristic functions of Turing decidable sets, the class of Turing computable functions is closed by composition, concatenation, primitive recursion and minimization. Examples of Turing computable functions. Recursive Functions: equivalence between Turing computability and recursive functions. Ackermann function ([1] chapter 1,2,3,4,5 and [4] chapter 1).
- Time-constructible functions. The notion of T-clock. Examples of some time constructible function. Closure by composition.
- Non-deterministic Turing machines: characterization through the decidability of projection sets. Definition of the class of polynomial non-deterministic functions. NP-complete problems.
2) Lambda calculus and functional programming:
- Declarative programming: historical outline on the lambda calculus, basic definitions, the terms of the lambda calculus, the simple substitution. Relations on the lambda terms. Congruences, transition to the context. α-equivalence. alpha-equivalence passes to the context. Transitive closure of a relationship, owned by Church-Rosser. Listing of lambda-terms with respect to alpha-equivalence.
- Definition of beta-reduction and beta-equivalence. Church-Rosser's theorem for beta-reduction. Normal forms for beta-reduction. Beta-reduction strategies. Normalizing strategy: left reduction (left most-outer most). Head reduction. Soluble Terms. Head Normal Forms. Solvability characterization theorem.
- Representation of the recursive functions: lambda definability theorem. The existence of the fixed point for any lambda term. Church Fixed Point and Curry fixed point. - Representation of other data types in the lambda-calculus: pairs, lists, trees, the solution of recursive equations on lambda-terms ([2] chapters 1, 2, 5).
( reference books)
- P. Dehornoy, Calculabilite et Decidabilite, (1993) Springer-Verlag (in francese); - J.-L. Krivine, Lambda Calculus: Types and Models, (1993) Ellis Horwood editore. - M. Sipser, An introduction to the theory of computation (2005), Course Technology.
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20410139 -
AN430 - FINITE ELEMENTS METHOD
(objectives)
Introduce the Finite Element Method for the Numeric Solution of Partial Derivative Equations; in particular: computational fluid dynamics, transport problems; mechanics of computational solids.
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Derived from
20410139 AN430 - METODO ELEMENTI FINITI in SCIENZE COMPUTAZIONALI (DM 270) LM-40 TERESI LUCIANO
( syllabus)
The purpose of this course is to give a brief introduction to the Finite Elements Method (FEM), a gold standard for the numerical solution of PDEs systems. Oddly enough, the widespread use of the FEM is not accompanied by an adequate knowledge of the mathematical framework underlying the method.
This course, starting from the weak formulation of balance equations, will give an overview of the techniques used to reduce a differential problem into an algebraic one. During the course, some selected problems in mechanics and physics will be solved, covering the three main types of equations: elliptic, parabolic and hyperbolic. The course will cover the following topics: - Applied Linear Algebra. - Boundary Value Problems. - Initial Value Problems Moreover, the students will be introduced to the use COMSOL Multiphysics, a scientific software for numerical simulations based on the Finite Element Method.
( reference books)
Mark S. Gockenbach, Understanding and Implementing the Finite Elements Method, SIAM, 2006
Gilbert Strang Computational Science and Engineering Wellesley-Cambridge Press, 2007
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MAT/08
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20410142 -
FS440 - DATA ACQUISITION
(objectives)
To provide the student with basic knowledge of how to build a nuclear physics experiment based on data collection by detector, equipment control and experiment, monitoring of the good functioning of the equipment and the quality of the Acquired data.
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Derived from
20401070 ACQUISIZIONE DATI E CONTROLLO DI ESPERIMENTI in FISICA (DM 270) LM-17 N0 RUGGIERI FEDERICO
( syllabus)
The course is organised in a combination of lectures and laboratory. The lectures start introducing basic technical topics that are fundamental in order to understand the panorama of architectural approaches. The classical components of a data acquisition system, the issues and opportunities offered by different technical choices are also discussed. A non exhaustive list of the technical topics addressed during the course are: trigger, data acquisition systems, on-line systems, real-time systems, event building, communication networks and protocols, data archiving and mass storage.
( reference books)
Copy of the presentations made during the lectures.
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FIS/04
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20410143 -
IN440 - COMBINATORIAL OPTIMISATION
(objectives)
Acquire skills on key resolution techniques for combinatorial optimization issues; To deepen the skills on graph theory; Acquire advanced technical skills for designing, analyzing and deploying algorithms for troubleshooting graphics, trees, and flow networks.
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LIVERANI MARCO
( syllabus)
1. Introduction to graph theory: graph, directed graph, tree, rooted tree, connection, strong connection, acyclic graph; graphs isomorphisms, planarity, Kuratowski's theorem, Euler's formula; graph coloring; Eulerian paths, Hamiltonian circuits.
2. Theory of algorithms and optimization: recalls on algorithms and structured programming; computational complexity of an algorithm, complexity classes for problems, classes P, NP, NP-complete, NP-hard; decision-making, research, enumeration and optimization problems; non-linear programming problems, convex programming, linear programming and integer linear programming; combinatorial optimization problems.
Recalls on the elements of combinatorial calculation, algorithms for the generation of the set of parts of a finite set, permutations and combinations of the elements of a set, calculation of the binomial coefficient; the problem of the "Latin squares" and the game of Sudoku; a recursive algorithm for the solution of the game.
3. Optimization problems on graphs and network flows: graph visit, verification of fundamental properties of a graph: connection, strong connection, presence of cycles. Topological sorting of an directed acyclic graph.
The problem of the minimum spanning tree, Kruskal's algorithm, Prim's algorithm, formulation of the problem in terms of Integer Linear Programming.
Search for minimum cost paths on a weighed graph; minimum cost path with single source, Dijkstra's algorithm, Bellman-Ford's algorithm; minimum cost path between all pairs of vertices of the graph, dynamic programming algorithms, Floyd-Warshall's algorithm, transitive closure of a graph.
Network flows and the maximum flow on a network, Theorem of maximum flow and minimum cut, Ford-Fulkerson's algorithm, Edmonds-Karp's algorithm, preflow algorithm, "push-relabel" algorithm.
Problems of partitioning of graphs, trees and paths, problems for the optimal partitioning of trees and paths into p connected components; objective functions, algorithmic techniques for the solution of this class of problems (dynamic programming, linear programming, shifting).
Stable marriage problem, problem definition and matching stability criterion, applications, Gale and Shapley algorithm.
4. Programming laboratory for developing C language programs for the optimizations algorithms of algorithms in GNU/Linux environment and with Wolfram Mathematica software.
( reference books)
Cormen, Leiserson, Rivest, Stein, "Introduction to algorithms", third edition, The MIT Press, 2009
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INF/01
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20410148 -
IN480 - PARALLEL AND DISTRIBUTED COMPUTING
(objectives)
Acquire parallel and distributed programming techniques and knowledge of modern hardware and software architectures for high performance scientific computing. Introduce distributed iterative methods for the simulation of numeric problems. Acquire the knowledge of newly conceived languages for dynamic programming in scientific computation, such as Julia's language.
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Derived from
20410148 IN480 - CALCOLO PARALLELO E DISTRIBUITO in SCIENZE COMPUTAZIONALI (DM 270) LM-40 PAOLUZZI ALBERTO, D'AUTILIA ROBERTO
( syllabus)
Short introduction to Julia for scientific programming. Introduction to parallel aechitectures. Designi principles of parallel algorithms. Prallel and distributed programming with Julia. Comunication and sincronization primitives: MPI paradigm. Directive-based languages: OpenMP. Performance metrics of parallel programs. Matrix operations and dense linear systems: mentions to BLAS, LAPACK, scaLAPACK. Sparse linear systems. Mentions to CombBLAS and GraphBLAS.
( reference books)
1. [Lecture slides and diary](https://github.com/cvdlab-courses/pdc/blob/master/schedule.md)
2. [Learning Julia](https://www.manning.com/books/julia-in-action)
3. Blaise N. Barney, [HPC Training Materials](https://computing.llnl.gov/tutorials/parallel_comp/), per gentile concessione del Lawrence Livermore National Laboratory's Computational Training Center
4. J. Dongarra, J. Kurzak, J. Demmel, M. Heroux, [Linear Algebra Libraries for High- Performance Computing: Scientific Computing with Multicore and Accelerators](http://www.netlib.org/utk/people/JackDongarra/SLIDES/sc2011-tutorial.pdf), SuperComputing 2011 (SC11)
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ING-INF/05
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20410145 -
FS450 - STATISTICAL MECHANICS
(objectives)
Acquire the basic knowldege of the fundamental principles of statistiscal mechanics for classical and quantum systems.
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FIS/02
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60
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20402094 -
AL410 - COMMUTATIVE ALGEBRA
(objectives)
THE PURPOSE OF THIS COURSE IS TO DEEPEN THE KNOWLEDGE OF SOME TOOLS AND FUNDAMENTAL PROPERTIES OF COMMUTATIVE RINGS AND THEIR MODULES, WITH PARTICULAR EMPHASIS TO THE CASE OF RINGS ARISING IN ALGEBRAIC NUMBER THEORY AND ALGEBRAIC GEOMETRY.
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MAT/02
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20402097 -
AM410 - ELLITTIC PARTIAL DIFFERENTIAL EQUATIONS
(objectives)
To develop a good knowledge of the general methods and the classical techniques useful in the study of partial differential equations
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Derived from
20402097 AM410 - EQUAZIONI ALLE DERIVATE PARZIALI DI TIPO ELLITTICO in MATEMATICA (DM 270) LM-40 N0 ESPOSITO PIERPAOLO
( syllabus)
1. Preliminaries Definition of hyper-surface. Integration on hyper-surfaces. The divergence theorem.
2. The Laplace equation Mean value inequalities. Minimum and maximum principle. The Harnack inequality. The Green representation. The Poisson integral. Convergence theorems. Interior estimates on the derivatives. The Dirichlet problem: the method of sub-harmonic functions.
3. The classical maximum principle The weak maximum principle. The strong maximum principle. The Hopf lemma.
4. The Poisson equation and the Newtonian potential Hölder-continuity. The Dirichlet problem for the Poisson equation. Hölder estimates for second derivatives. Boundary estimates. Hölder estimates for first derivatives.
5. Banach and Hilbert spaces The contraction principle. The continuity method.
6. Classical solutions: the Schauder approach Schauder interior estimates. Boundary and global estimates. The Dirichlet problem. Boundary and interior regularity.
( reference books)
“Elliptic partial differential equations of second order. Reprint of the 1998 edition”, D. Gilbarg e N.S. Trudinger. Classics in Mathematics. Springer-Verlag, Berlin, 2001.
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MAT/05
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20402088 -
AN410 - NUMERICAL ANALYSIS 1
(objectives)
Provide the basic elements (including implementation in a programming language) of basic numerical approximation techniques, in particular those related to the solution of linear systems and nonlinear scalar equations, interpolation and approximate integration.
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Derived from
20402088 AN410 - ANALISI NUMERICA 1 in SCIENZE COMPUTAZIONALI (DM 270) LM-40 FERRETTI ROBERTO, CACACE Simone
( syllabus)
Linear Systems Direst methods: Gaussian elimination. Pivoting strategies. Gaussian elimination as a factorization. Doolittle and Choleshy factorizations. Iterative methods: Jacobi, Gauss-Seidel, SOR, Richardson, and related convergence results. Comparison of direct vs iterative solvers. Stability of algorithms for the solution of linear systems.
Iterative Methods for Scalar Nonlinear Equations The intermediate zero theorem. The algorithms of bisection, Newton, secants, chords, and related convergence results. (Reference: Chapter 1 excluding Section 1.2.3, and Appendices A.1, A.2)
Approximation of Functions General approximation strategies. Interpolating polynomial in Lagrange and Newton form. Representation of the interpolation error. Convergence of the interpolating polynomial for analytic functions. Refinement strategies in interpolation: Chebyshev nodes, composite approximations. Error estimates. Hermite polynomial, construction and representation of the error. Least Squares approximations. (Reference: Chapter 5 excluding Section 5.2, and Appendix A.4)
Numerical Integration General principles of numerical integration. Polya's Theorem on the convergence of interpolatory quadrature formulae. Closed and open Newton-Cotes formulae. Stability results and error estimation. Generalized Newton-Cotes formulae and their convergence. Gaussian quadratures and their convergence. (Reference: Chapter 6)
Laboratory Activity C language coding of some of the major algorithms, and in particular: Gaussian elimination, iterative methods for linear systems and scalar equations, Lagrange/Newton interpolation with a refinement strategy.
N.B.: References are provided with respect to the course notes.
( reference books)
Roberto Ferretti, "Appunti del corso di Analisi Numerica", available at the address: http://www.mat.uniroma3.it/users/ferretti/corso.pdf
Slides of the lessons, available from the course page: http://www.mat.uniroma3.it/users/ferretti/bacheca.html
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MAT/08
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20402093 -
CP410 - PROBABILITY 2
(objectives)
To gain a solid knowledge of the basic aspects of probabilità theory: construction of probabilità measures on measurable spaces, 0-1 law, independence, conditional expectation, random variables, convergence of random variables, characteristic functions, central limit theorem, branching processes, discrete martingales.
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Derived from
20402093 CP410 - PROBABILITA' 2 in SCIENZE COMPUTAZIONALI (DM 270) LM-40 CAPUTO PIETRO
( syllabus)
1. Probability
Introductory example: The branching process. Introduction to measure theory. Measure spaces. Events. Uniqueness and extension of measure. Probability measures. First Borel--Cantelli lemma. Random variables, distribution function and law. Indipendence. Second Borel--Cantelli lemma. 0--1 law for independent random variables.
2. Integration, expected value
Introduxction to integration theory. Monotone convergence theorem. Expectation. Taking the limit under expectation. Jensen's inequality. L_p norms. H\"older inequality and Cauchy-Schwarz. Markov's inequality. Examples of weak and strong laws of large numbers. Product measures. Fubini theorem. Joint laws.
3. Conditional expectation, martingales and limit theorems
Conditional expectation with respect to a sub $\sigma$--algebra. Kolmogorov existence and uniqueness theorem. Filtrations. Martingale. Gambilng. Stopping times. Optional stopping. Some applications to exit times from an interval. Convergence theorem for martingales in L_1 and in L_2. Kolmogorov's strong law of large numbers.
4. Convergence ind distribution and the central limit theorem
Characteristic functions. Inversion theorem. Equivalence between convergence in distributiona nd pointwise convergence of characteristic functions. Various modes of convergence for random variables. Examples.
( reference books)
D. Williams. Probability with martingales Cambridge University Press, 1991
R. Durrett Probability: Theory and Examples Thomson, 2000
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MAT/06
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20402090 -
MC410 - COMPLEMENTARY MATHEMATICS 1
(objectives)
To acquire deep understanding of the principal geometry arguments treated in high-school mathematics
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MAT/04
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20402104 -
GE410 - ALGEBRAIC GEOMETRY 1
(objectives)
Introduction to the study of topological and geometrical structures defined using algebraic methods. Refinement of the algebraic knowledge using applications to the study of algebraic varieties in affine and projective spaces.
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Derived from
20402104 GE410 - GEOMETRIA ALGEBRICA 1 in MATEMATICA (DM 270) LM-40 N0 LOPEZ ANGELO
( syllabus)
Affine Spaces Zariski topology. Affine closed subsets and radical ideals. Theorem of the zeros of Hilbert. Correspondence between closed subsets and radical ideals. Noetherian topological spaces. Irreducible closed subsets, irreducible components. Regular functions of affine closed subsets. Regular maps, isomorphisms. Principal open subsets. Examples. Projections are open. Finite morphisms.
Varieties Projective spaces and their Zariski topology. Quasi-projective varieties. Rational and regular maps. Projective hypersurfaces. Birational equivalence. Principal open subsets and affine closed subsets. Affine varieties. Dimension of quasi-projective varieties. Finite and generically finite morphisms. Characterizations of birational equivalence. Characterization of generically finite morphisms. Costructible sets, Chevalley's theorem. Every variety is birational to a hypersurface.
Local geometry Local ring of a variety in a point. Zariski cotangent space. Zariski tangent space. Singular and non singular points.
( reference books)
L. Caporaso Introduction to algebraic geometry Notes of the course
I. Shafarevich Basic Algebraic geometry Springer-Verlag, Berlin, 1994
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MAT/03
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20402103 -
FM410 - MATHEMATICAL PHYSICS 3
(objectives)
CONTINUING THE STUDY, BEGAN DURING FM210, OF DYNAMIC SYSTEMS OF PHYSICAL INTEREST WITH MOST STYLISH AND POWERFUL TECHNIQUES, SUCH AS THE LAGRANGIAN AND HAMITONIAN FORMALISM, THAT ARE IN THE VAST RANGE OF APPLICATIONS OF ANALYSIS AND MATHEMATICAL PHYSICS.
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Derived from
20402103 FM410 - FISICA MATEMATICA 3 in MATEMATICA (DM 270) LM-40 N0 GENTILE GUIDO
( syllabus)
LAGRANGIAN AND HAMILTONIAN MECHANICS. VARIATIONAL PRINCIPLES. CONSTRAINTS. CYCLICI VARIABLES. CONSTANTS OF MOTION AND SYMMETRIES. HAMILTONIAN FLOWS. LIOUVILLE THEOREM AND POINCARE RECURRENCE THEOREM. CANONICAL TRANSFORMATIONS. GENERATING FUNCTIONS. HAMILTON-JACOBI METHOD AND ACTION-ANGLE VARIABLES. PERTURBATION THEORY. KAM THEOREM.
( reference books)
[1] G. GENTILE,INTRODUZIONE AI SISTEMI DINAMICI. 1.EQUAZIONI DIFFERENZIALI ORDINARIE, ANALISI QUALITATIVA E ALCUNE APPLICAZIONI. AVAILABLE ON-LINE: http://www.mat.uniroma3.it/users/gentile/2016-2017/FM410/testo.html [2] G. GENTILE,INTRODUZIONE AI SISTEMI DINAMICI. 2.FORMALISMO LAGRANGIANO E HAMILTONIANO. AVAILABLE ON-LINE: http://www.mat.uniroma3.it/users/gentile/2016-2017/FM410/testo.html [3] G. DELL'ANTONIO, ELEMENTI DI MECCANICA. LIGUORI EDITORE, (1996) [4] V.I. ARNOLD, METODI MATEMATICI DELLA MECCANICA CLASSICA. EDITORI RIUNITI, (1979) [5] G. GALLAVOTTI, MECCANICA ELEMENTARE. BOLLATI-BORINGHIERI, (1980)
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MAT/07
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20410147 -
IN470- COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
(objectives)
Acquire the basic knowledge of biological systems and problems related to their understanding also in relation to deviations from normal functioning and thus on the onset of pathologies. Maintain the modeling aspect as well as that of numerical simulation, especially problems formulated by equations and discrete systems. Acquire the knowledge of the major bio-informatics algorithms useful for analyzing biological data.
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Derived from
20410147 IN470 - METODI COMPUTAZIONALI PER LA BIOLOGIA in SCIENZE COMPUTAZIONALI (DM 270) LM-40 CASTIGLIONE Filippo
( syllabus)
Outline of the course; Introduction and generality; Bioinformatics and algorithms; Computational biology in the clinic and in the pharmaceutical industry; Pharmacokinetics and pharmacodynamics;
Introduction to Systems Biology: what is computational biology; The roles of mathematical modeling and bioinformatics; what is he aiming for; what are the problems; Theoretical tools used in bio-mathematics and bioinformatics.
Introduction to molecular and cellular biology (first part): basic knowledge of genetics, proteomics and cellular processes; Ecology and evolution; the basic molecule; molecular bonds; the chromosomes; DNA and its replication;
Introduction to molecular and cellular biology (second part); genomics; The central dogma of biology; The genome project; the structure of the human genome Analysis of genes; transcription of DNA; the viruses;
Laboratory: generation of random numbers; the functions srand48 and drand48; random generation of arbitrary length nucleotide strings (program1.c); random generation of amino acid strings of arbitrary length (program2.c);
Introduction to information theory; Shannon Entropy; Conditional Entropy; Mutual Information; Indices of biological diversity; Shannon Index; True diversity; Reny index;
Laboratory: the genetic code; C program of transcription DNA sequence and translation into proteins;
Introduction to stochastic processes; basic definition; examples; model of queues; Bernoulli and Poisson process; Markov processes; stochastic processes in bioinformatics and bio-mathematics; the autocorrelation; Outline of the Random Walks and the BLAST algorithm of sequence alignment as a stochastic process and principal algorithm for the consultation of biological sequence databases;
Laboratory: development of an algorithm in C for the calculation of the Shannon Entropy of a text in English (or in Italian) any (e.g., http://www.textfiles.com/etext/)
Random walks. The BLAST algorithm for aligning sequences as a random path; Laboratory: C implementation of different algorithms for the generation of a random walk in 1D and 2D on the lattice and in R or R ^ 2 signal and calculation of the mean square displacement;
Compare sequences: similarity and homology; pairwise alignment; editing distance; scoring matrices PAM and BLOSUM; Needleman-Wunsch's algorithm; local alignment; Smith-Waterman's algorithm; BLAST algorithm;
Laboratory: C implementation of an algorithm for the generation of a signal with noise and calculation of the correlogram in the presence or absence of a true signal;
Multiple Sequence Alignment; consensus sequence; star alignment algorithms; ClustalW; entropy and circular sum scoring functions;
Biological data banks; reasons; data format; taxonomy; Primary DBs; Secondary DBs; NCBI, EMBL, DDBJ; NCBI EBI-Entrez; Exact matching / string searching: general; the agony of Knuth-Morris-Pratt;
Exact matching / string searching: the Boyer-Moore agoritm;
Exercise on an implementation of the Knuth-Morris-Pratt exact matching algorithm. Exercise on biological databases; primary databases; secondary databases; NCBI, EMBL, DDBJ; NCBI EBI-Entrez; Use of the BLAST algorithm
Phylogenetic Analysis; phylogenetic trees; dimension of the research space of phylogenetic algorithms; Methods of construction of phylogenetic trees; Data used for phylogenetic analysis; The Unweighted Pair Method Method with Arithmetic mean (UPGMA) algorithm; the Neighbor Joining Method algorithm; Hidden Markov Models; decoding; the Viterbi Algorithm; Evaluation;
Laboratory: completion of the exercise on mutation, selection and evolution of nucleotide strings (genotype) translated into amino acid strings (phenotype); Selection is made based on the presence of certain substrings in the phenotype that determines the fitness value; Implemented details, display of the convergence criterion and results, discussion, etc .;
Machine Learning; generality'; supervised and unsupervised learning; model selection; undefitting; overfitting; Polynomial curve fitting; machine learning as an estimate of the parameters and the problem of overfitting; subdivision of the training set into testing and testing; concept of bias and variance trade-off; Artificial Neural Networks; definizone; the percussion of Rosenblatt; the percettrone learning algorithm; the multi-layer perceptron;
Laboratory: completion of the implementation in ANSI C of the evolutionary algorithm of nucleotide strings (genotype) translated, through the use of the genetic code, into amino acid strings (phenotype);
Hidden Markov Models; The Forward Algorithm; The Backward Algorithm; Posterior Decoding; Learning; Baum-Welch Algorithm; Use of Hidden Markov Models for the analysis of bio-sequences; gene finding;
Artificial Neural Networks; the error-back propagation algorithm for learning MLP; types of neural networks; convolution networks; reinforcement networks; unsupervised learning and self-organizing maps; Introduction to graph theory; representation, terminology, concepts; paths; cycles; connettivita '; distance; connected components; distance;
Introduction to graph theory; visit breadth-first search; depth-first search; Dijkstra's algorithm; six-degree of separation; small world networks; centrality measures; degree centrality; eigenvector centrality; betweennes centrality; closeness centrality; The network biology; generality'; concepts; types of biological data used to build networks; network biology and network medicine; problems and algorithms used; centrality measures; random networks; scale-free networks; preferential attachment; scale-free network in biology;
Laboratory: completion of the exercise on the evolutionary algorithm; Implemented details, display of the convergence criterion and results, discussion, etc .;
Bio-mathematical models; prediction using theoretical models; the itertative paradigm of mathematical modeling; data-driven models; limited and non-population growth models; analytical derivation and examples; logistics growth; ecological models limited by density; The Lotka-Volterra model; the experiment by Huffaker and Kenneth; the SIR epidemic model and some of its variants; Perelson's model for HAART; the Java Populus application for the solution of continuous models of population dynamics; hints to the numerical resolution methods of differential equation systems;
Discrete models; spin models (Ising models); Cellular automata; Boolean networks; Agent-based models; data fitting and parameter estimation; software tools available; Cellular automata; introduction and history; definition; the 1-dimensional automaton; Wolfram classification; the 2-dimensional automaton; Conway's Game of Life; Software available for CA simulation; dedicated hardware (CA-Machine); the prey-predator model as a two-dimensional cellular automaton; relationship with the system of ordinary derivation equations; stochastic models; Stochastic CAs as discrete stochastic dynamic systems and stochastic processes; example of CA: Belousov-Zabotonsky reactions;
( reference books)
[-] E.S. Allman, J.A. Rhodes. Mathematical Models in Biology: An Introduction (2004) Cambridge University Press. [-] W.J. Ewens, G.R. Grant. Statistical Methods in Bioinformatics, An Introduction (2005) Springer Verlag. [-] R. Durbin, S. Eddy, A. Krogh, G. Mitchison. Biological sequence analysis - Probabilistic models of proteins and nucleic acids (1998) Cambridge University Press.
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INF/01
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20410189 -
LM410 -THEOREMS IN LOGIC 1
(objectives)
To acquire a good knowledge of first order classical logic and its fundamental theorems
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MAT/01
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20410190 -
LM420 - THEOREMS IN LOGIC 2
(objectives)
To support the students into an in-depth analysis of the main results of first order classical logic and to study some of their remarkable consequences
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MAT/01
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